NNGT
0.7
Modules
Index
GitHub
Site
User Documentation
Installation
Dependencies
Simple install
Local install
Configuration
Using NEST
Introduction
Yet another graph library?
Description
Tutorial
The
Graph
object
Generating and analyzing more complex networks
Making complex populations
Real neuronal culture and NEST interaction: the
Network
Using the graph library of the NNGT object
NNGT configuration status
Modules
Main module
Graph classes
Main functions
Side classes
NNGT
Main classes and functions
Analysis module
Core module
Generation module
Geometry module
Lib module
Plot module
Simulation module
Analysis module
Content
Generation module
Content
Geometry module
Overview
Lib module
Content
Details
Plot module
Content
Details
Simulation module
Content
Details
Current
Table of content
User Documentation
Installation
Introduction
Tutorial
Modules
Main module
Analysis module
Generation module
Geometry module
Lib module
Plot module
Simulation module
Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
L
|
M
|
N
|
P
|
R
|
S
|
T
|
U
|
W
A
activity_types() (in module nngt.simulation)
ActivityRecord (class in nngt.simulation)
add_to_group() (nngt.NeuralPop method)
adjacency_matrix() (in module nngt.analysis)
analyze_raster() (in module nngt.simulation)
Animation2d (in module nngt.plot)
AnimationNetwork (in module nngt.plot)
assortativity() (in module nngt.analysis)
attributes() (nngt.Graph method)
B
bayesian_blocks() (in module nngt.analysis)
betweenness_distrib() (in module nngt.analysis)
betweenness_distribution() (in module nngt.plot)
binning() (in module nngt.analysis)
C
closeness() (in module nngt.analysis)
clustering() (in module nngt.analysis)
compare_population_attributes() (in module nngt.plot)
connect_neural_groups() (in module nngt.generation)
connect_neural_types() (in module nngt.generation)
Connections (class in nngt.core)
copy() (nngt.Graph method)
(nngt.NeuralPop class method)
correlation_to_attribute() (in module nngt.plot)
create_group() (nngt.NeuralPop method)
D
data (nngt.simulation.ActivityRecord attribute)
degree_distrib() (in module nngt.analysis)
degree_distribution() (in module nngt.plot)
delays() (nngt.core.Connections static method)
delta_distrib() (in module nngt.lib)
diameter() (in module nngt.analysis)
distance_rule() (in module nngt.generation)
distances() (nngt.core.Connections static method)
draw_network() (in module nngt.plot)
E
eattr_class (nngt.Graph attribute)
edge_id() (nngt.Graph method)
edges_array (nngt.Graph attribute)
edges_attributes (nngt.Graph attribute)
ei_network() (nngt.Network class method)
erdos_renyi() (in module nngt.generation)
exc_and_inhib() (nngt.NeuralPop class method)
F
find_idx_nearest() (in module nngt.lib)
fixed_degree() (in module nngt.generation)
from_file() (nngt.Graph static method)
from_gids() (nngt.Network class method)
from_groups() (nngt.NeuralPop class method)
from_matrix() (nngt.Graph class method)
from_network() (nngt.NeuralPop class method)
G
gaussian_degree() (in module nngt.generation)
gaussian_distrib() (in module nngt.lib)
generate() (in module nngt)
get_attribute_type() (nngt.Graph method)
get_b2() (in module nngt.analysis)
get_betweenness() (nngt.Graph method)
get_config() (in module nngt)
get_degrees() (nngt.Graph method)
get_delays() (nngt.Graph method)
get_density() (nngt.Graph method)
get_firing_rate() (in module nngt.analysis)
get_graph_type() (nngt.Graph method)
get_group() (nngt.NeuralPop method)
get_name() (nngt.Graph method)
get_nest_adjacency() (in module nngt.simulation)
get_neuron_type() (nngt.Network method)
get_param() (nngt.NeuralPop method)
get_positions() (nngt.SpatialGraph method)
get_recording() (in module nngt.simulation)
get_spikes() (in module nngt.analysis)
get_weights() (nngt.Graph method)
Graph (class in nngt)
graph_id (nngt.Graph attribute)
GraphObject (in module nngt.core)
GroupProperty (class in nngt)
H
has_model (nngt.NeuralGroup attribute)
has_models (nngt.NeuralPop attribute)
I
id_from_nest_gid() (nngt.Network method)
ids (nngt.NeuralGroup attribute)
InvalidArgument
is_directed() (nngt.Graph method)
is_network() (nngt.Graph method)
is_spatial() (nngt.Graph method)
is_valid (nngt.NeuralPop attribute)
is_weighted() (nngt.Graph method)
L
lin_correlated_distrib() (in module nngt.lib)
load_from_file() (in module nngt)
local_clustering() (in module nngt.analysis)
log_correlated_distrib() (in module nngt.lib)
lognormal_distrib() (in module nngt.lib)
M
make_nest_network() (in module nngt.simulation)
make_network() (nngt.Graph static method)
make_spatial() (nngt.Graph static method)
monitor_groups() (in module nngt.simulation)
monitor_nodes() (in module nngt.simulation)
N
name (nngt.Graph attribute)
nattr_class (nngt.Graph attribute)
neighbours() (nngt.Graph method)
nest_gid (nngt.Network attribute)
nest_gids (nngt.NeuralGroup attribute)
Network (class in nngt)
NeuralGroup (class in nngt)
NeuralPop (class in nngt)
neuron_model (nngt.NeuralGroup attribute)
neuron_properties() (nngt.Network method)
new_edge() (nngt.Graph method)
new_edge_attribute() (nngt.Graph method)
new_edges() (nngt.Graph method)
new_node() (nngt.Graph method)
new_node_attribute() (nngt.Graph method)
newman_watts() (in module nngt.generation)
nngt.analysis (module)
nngt.core (module)
nngt.generation (module)
nngt.geometry (module)
nngt.lib (module)
nngt.plot (module)
nngt.simulation (module)
node_attributes() (in module nngt.analysis)
node_attributes_distribution() (in module nngt.plot)
nodes_attributes (nngt.Graph attribute)
nonstring_container() (in module nngt.lib)
num_graphs() (nngt.Graph class method)
num_iedges() (in module nngt.analysis)
num_networks() (nngt.Network class method)
num_scc() (in module nngt.analysis)
num_wcc() (in module nngt.analysis)
P
palette() (in module nngt.plot)
phases (nngt.simulation.ActivityRecord attribute)
plot_activity() (in module nngt.simulation)
plot_shape() (in module nngt.geometry)
population (nngt.Network attribute)
price_scale_free() (in module nngt.generation)
properties (nngt.NeuralGroup attribute)
(nngt.simulation.ActivityRecord attribute)
R
random_scale_free() (in module nngt.generation)
randomize_neural_states() (in module nngt.simulation)
raster_plot() (in module nngt.simulation)
reciprocity() (in module nngt.analysis)
reproducible_weights() (in module nngt.simulation)
S
save_spikes() (in module nngt.simulation)
save_to_file() (in module nngt)
seed() (in module nngt)
set_config() (in module nngt)
set_delays() (nngt.Graph method)
set_edge_attribute() (nngt.Graph method)
set_minis() (in module nngt.simulation)
set_model() (nngt.NeuralPop method)
set_name() (nngt.Graph method)
set_noise() (in module nngt.simulation)
set_param() (nngt.NeuralPop method)
set_poisson_input() (in module nngt.simulation)
set_step_currents() (in module nngt.simulation)
set_types() (nngt.Graph method)
(nngt.Network method)
(nngt.SpatialNetwork method)
set_weights() (nngt.Graph method)
Shape (in module nngt.geometry)
shape (nngt.SpatialGraph attribute)
simplify() (nngt.simulation.ActivityRecord method)
size (nngt.NeuralGroup attribute)
(nngt.NeuralPop attribute)
SpatialGraph (class in nngt)
SpatialNetwork (class in nngt)
spectral_radius() (in module nngt.analysis)
subgraph_centrality() (in module nngt.analysis)
T
to_file() (nngt.Graph method)
to_nest() (nngt.Network method)
total_firing_rate() (in module nngt.analysis)
transitivity() (in module nngt.analysis)
type (nngt.Graph attribute)
types() (nngt.core.Connections static method)
U
uniform() (nngt.NeuralPop class method)
uniform_distrib() (in module nngt.lib)
uniform_network() (nngt.Network class method)
use_library() (in module nngt)
W
weights() (nngt.core.Connections static method)