Geometry module¶

import matplotlib.pyplot as plt

import PyNCulture as pnc


fig, ax = plt.subplots()

''' Choose a shape (uncomment the desired line) '''
culture = pnc.Shape.rectangle(15, 20, (5, 0))
# culture = pnc.Shape.disk(20, (5, 0))
# culture = pnc.Shape.ellipse((20, 5), (5, 0))

''' Generate the neurons inside '''
pos = culture.seed_neurons(neurons=1000, xmax=0., ymax=0.)

''' Plot '''
pnc.plot_shape(culture, ax)
ax.scatter(pos[:, 0], pos[:, 1], s=2, zorder=2)

plt.show()

import matplotlib.pyplot as plt

import PyNCulture as pnc


''' Choose a file '''
culture_file = "culture_from_filled_polygons.svg"
# culture_file = "culture_with_holes.svg"
# culture_file = "culture.dxf"

shapes = None

if culture_file.endswith(".dxf"):
    shapes = pnc.shapes_from_dxf(culture_file)
else:
    shapes = pnc.shapes_from_svg(culture_file)

''' Plot the shapes '''
fig, ax = plt.subplots()
plt.title("shapes")

for shape in shapes:
    pnc.plot_shape(shape, ax)

''' Make a culture '''
fig2, ax2 = plt.subplots()
plt.title("culture")

culture = pnc.culture_from_file(culture_file)

pnc.plot_shape(culture, ax2)

''' Add neurons '''
fig3, ax3 = plt.subplots()
plt.title("culture with neurons")

culture_bis = pnc.culture_from_file(culture_file)
pos = culture_bis.seed_neurons(neurons=1000, xmax=0)

pnc.plot_shape(culture_bis, ax3)
ax3.scatter(pos[:, 0], pos[:, 1], s=2, zorder=3)

plt.show()